Publications

Li, W., Hung, P.-H., Matsui, T., Levy, S., & Sherlock, G. (2025). Scaling DNA engineering. Trends in Biotechnology, 43(10). https://doi.org/10.1016/j.tibtech.2025.05.002

Gjorgjieva, T., & Rosenberg, N. (2025). Toward minimal SNP sets for record-matching with CODIS STR profiles. European Journal of Human Genetics. https://doi.org/10.1038/s41431-025-01941-7

Robles, N., Moran, B., Barreras, M. ., Jofre, G. ., Gunn, T., Iverson, E., Beskid, S., Baczenas, J., Sedghifar, A., Andolfatto, P., Powell, D., Brandvain, Y., Havird, J., Rosenthal, G., & Schumer, M. (2025). Admixture Mapping Reveals Evidence for Multiple Mitonuclear Incompatibilities in Swordtail Fish Hybrids. Molecular Ecology. https://doi.org/10.1111/mec.70106

Aguirre, M., Spence, J., Sella, G., & Pritchard, J. (2025). . Gene regulatory network structure informs the distribution of perturbation effects. PloS Computational Biology. https://doi.org/10.1101/2025.08.12.669924

Kasser, S., Nala, K., Fortunato, L., & Feldman, M. (2025). Not by Selection Alone: Expanding the Scope of Gene-Culture Coevolution. Evolutionary Anthropology, 34(3). https://doi.org/10.1002/evan.70007

Fogarty, L., Zhang, S., & Feldman, M. (2025). Gene-culture association and coevolution. Theoretical Population Biology, 165, 62-71. https://doi.org/10.1016/j.tpb.2025.08.003

Starr, A., Nishimura, T., Igarashi, K., Funamoto, C., Nakauchi, H., & Fraser, H. (2025). Disentangling cell-intrinsic and cell-extrinsic factors underlying evolution.. Cell Genomics, 5(8). https://doi.org/10.1016/j.xgen.2025.100891

Aguirre, M., Spence, J., & Pritchard, J. (2025). Regulatory network topology and the genetic architecture of gene expression. bioRxiv. https://doi.org/10.1101/2025.08.12.669924

Judd, J., Spence, J., Pritchard, J., Kachuri, L., & Witte, J. (2025). Investigating the role of neighborhood socioeconomic status and germline genetics on prostate cancer risk. HGG Advances, 6(4). https://doi.org/10.1016/j.xhgg.2025

Frayer, M., Robles, N., Rodríguez-Barrera , M. ., Coughlan, J., & Schumer, M. (2025). The molecular evolutionary basis of species formation revisited.. Trends in Genetics.

Yeh, C., Wall, D., Matthys, K., Sabatti, C., & Palacios, J. (2025). Curriculum Design in an Evolving Field: Perspectives on Biomedical Data Science from Stanford.. Annual Review of Biomedical Data Science, 8(1), 341-354. https://doi.org/10.1146/annurev-biodatasci-090624-022951

Smith, C., Strausz, S., Gen, F., Spence, J., Ollila, H., & Pritchard, J. (2025). Haplotype analysis reveals pleiotropic disease associations in the HLA region.. American Journal of Human Genetics, 112(8), 1833-1851. https://doi.org/10.1016/j.ajhg.2025.06.011

Ungar, R., Li, T., Vetr, N., Ersaro, N., Battle, A., & Montgomery, S. (2025). Transcriptomic signatures of rare variant impacts across sex and the X chromosome.. HGG Advances, 6(3). https://doi.org/10.1016/j.xhgg.2025.100463

Liu, X., Ahsan, Z., & Rosenberg, N. (2025). Using mathematical constraints to explain narrow ranges for allele-sharing dissimilarities.. Theoretical Population Biology. https://doi.org/10.1016/j.tpb.2025.05.002

Li, W., Hung, P., Matsui, T., Levy, S., & Sherlock, G. (2025). Scaling DNA engineering.. Trends Biotechnol. https://doi.org/10.1016/j.tibtech.2025.05.002

Yeh, C., Wall, D., Matthys, K., Sabatti, C., & Palacios, J. (2025). Curriculum Design in an Evolving Field: Perspectives on Biomedical Data Science from Stanford. Annu Rev Biomed Data Sci. https://doi.org/10.1146/annurev-biodatasci-090624-022951

Engel, S., Aleksander, S., Nash, R., Wong, E., Weng, S., Miyasato, S., Sherlock, G., & Cherry, J. (2025). Saccharomyces Genome Database: advances in genome annotation, expanded biochemical pathways, and other key enhancements. . Genetics, 229(3). https://doi.org/10.1093/genetics/iyae185

Preising, G., Gunn, T., Baczenas, J., Powell, D., Dodge, T., Sewell, S., Pollock, A., Kairuz, J., Savage, M., Lu, Y., Fitschen-Brown, M., Meyer, A., Schartel, M., Cummings, M., Thakur, S., Inman, C., Rios-Cardenas, O., Morris, M., Tobler, M., & Schumer, M. (2024). Recurrent evolution of small body size and loss of the sword ornament in Northern swordtail fish. Evolution. https://doi.org/doi.org/10.1093/evolut/qpae124

Marderstein, A., Zuani, M., Moeller, R., Bezney, J., Padhi, E., Wong, S., Coorens, T., Xie, Y., Xue, H. ., Montgomery, S., & Cvejic, A. (2024). Single-cell multi-omics map of human fetal blood in Down syndrome. Nature, 634. https://doi.org/10.1038/s41586-024-07946-4

Armstrong, E., Mooney, J., Solari, K., Kim, B., Barsh, G., Grant, V., Greenbaum, G., Kaelin, C., Panchenko, K., Pickrell, J., Rosenberg, N., Ryder, O., Yokoyama, T., Ramakrishnan, U., Petrov, D., & Hadley, E. (2024). Unraveling the genomic diversity and admixture history of captive tigers in the United States. PNAS, 121(39). https://doi.org/doi.org/10.1073/pnas.2402924121